Introduction
The ‘macrophage pathway analysis’ suite provides a workflow for
- curating a signal transduction pathway network describing transmember receptor (TM)-dependent activation of gene regulation
- performing ‘shortest path’ analyses that link transmembrane receptors to gene up/down regulation
Click Here to access our Colab-based NetworkX Script
[NOTE] To fully utilize the given script, you must follow the instruction first. Please, get familiar with the protocol we provide in this Tutorial.
Required Software
- Cytoscape: Provide a great graphic support along with the large database of pathways (Signor, Wikipathway, etc.)
- Colab: Cloud-based iPython Notebook provided by Google
- Python: For the beginner, Kaggle should be useful and informative. You can register yourself with Google account.
Optional Software
- PathwayAnalysis: The backend code for the pathway analyses routines called in the colab notebook listed above.